Development of the catfish 250K SNP array for genome-wide association studies
نویسندگان
چکیده
منابع مشابه
SNP Set Association Analysis for Genome-Wide Association Studies
Genome-wide association study (GWAS) is a promising approach for identifying common genetic variants of the diseases on the basis of millions of single nucleotide polymorphisms (SNPs). In order to avoid low power caused by overmuch correction for multiple comparisons in single locus association study, some methods have been proposed by grouping SNPs together into a SNP set based on genomic feat...
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With the recent explosion in high-throughput genotyping technology, the amount and quality of single-nucleotide polymorphism (SNP) data has increased exponentially. Therefore, the identification of SNP interactions that are associated with common diseases is playing an increasing and important role in interpreting the genetic basis of disease susceptibility and in devising new diagnostic tests ...
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As high-throughput genetic marker screening systems are essential for a range of genetics studies and plant breeding applications, the International RosBREED SNP Consortium (IRSC) has utilized the Illumina Infinium® II system to develop a medium- to high-throughput SNP screening tool for genome-wide evaluation of allelic variation in apple (Malus×domestica) breeding germplasm. For genome-wide S...
متن کاملA Genome-wide SNP Genotyping Array
Figure S1 (Related to Figure 1). A. Genome graph showing distribution of SNPs across the genome. B. Estimated marker informativeness for an F2 intercross between wild caught sticklebacks. C. Histogram showing the distribution of average pairwise FST between global populations. Figure S2 (Related to Figure 3). A self dot-plot showing sequence similarity of a 390kb region on chromosome X with two...
متن کاملFidelity of SNP Array Genotyping Using Epstein Barr Virus-Transformed B-Lymphocyte Cell Lines: Implications for Genome-Wide Association Studies
BACKGROUND As availability of primary cells can be limited for genetic studies of human disease, lymphoblastoid cell lines (LCL) are common sources of genomic DNA. LCL are created in a transformation process that entails in vitro infection of human B-lymphocytes with the Epstein-Barr Virus (EBV). METHODOLOGY/PRINCIPAL FINDINGS To test for genotypic errors potentially induced by the Epstein-Ba...
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ژورنال
عنوان ژورنال: BMC Research Notes
سال: 2014
ISSN: 1756-0500
DOI: 10.1186/1756-0500-7-135